Updated metadata information for version, URI,  hasOntologyLanguage, status, hasFormalityLevel, hasOntologySyntax, deprecated, versionIRI attributes

…attribute (#157)

* add portal configuration model reading from config file

* add the serialize_default for the portal config model

…159)

* fix : prevent serialization of sensitive data

* remove syntax error

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Co-authored-by: Syphax <[email protected]>

* make category model accept multiple parentCategories

* keep the same attribute name for parentCategory to stay backword compatible

…s basename (#163)

* using basename in submission filename to prevent potential LFI

* Fix nil handling for filename in ontology file upload

* implement parse diff xml file into an openstruct

* add diff newAnnotation and deletedAnnotation to the parsed diff object

Merge to master: Release 2.5.2 - Security fixes, XML diff parsing and portal configuration model

* fix the issue when generating multilingual missing labels

* fixed the issues revealed by the failing unit tests

* handle the case that in ontoportal-lirmm branch we use "@none" not "none"

…y pull from remote location

Merge to master: Release 2.6.4 - fix multilingual missing labels generation, password reset token expiration, and ontology pull on demand trigger

* add unit test for filtering class children by a scheme

* implement submission class children function

* add unit test for filtering class children by a scheme

* implement submission class children function

* add unit test to catch the bug in goo_attrs_to_load

* fix the goo_attrs_to_load bug not including the correct embed properties

* add unit test to catch max tree threshold issue

* add the option to the build tree to augment the threshold if needed

* add unit test for filtering class children by a scheme

* implement submission class children function

* add unit test for zombie mapping count

* extract mapping count functions into a separated module

* remove mapping count if there ontologies does no more exist

* on submission archiving and deletion remove the graph

* update delete zombie mapping counts to check also submission deletion

* add unit test to be sure that archived submission data graph are removed

Merge to master:  Release

* filtering uris and literals in namespace_predict function

* add more tests to test_resource.rb

Fix: Export jsonld content error if literals has a / or # (#173)

…gy is parsed

… develop

Develop to Master merge.  Resolve missing metrics issue